PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00991.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 235aa    MW: 26397 Da    PI: 4.7308
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00991.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1875124355
                      AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr ++ +g+++AeIrd    + k  r++lg+f+taeeAa a+++a+ +l+g
  Rsa1.0_00991.1_g00001.1  75 YRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFALKG 124
                              9*******.**********32..2.24***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-3774138IPR001471AP2/ERF domain
PROSITE profilePS5103222.98574132IPR001471AP2/ERF domain
PfamPF008472.4E-1374124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3074133IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2275134IPR016177DNA-binding domain
CDDcd000181.95E-2975133No hitNo description
PRINTSPR003673.6E-117586IPR001471AP2/ERF domain
PRINTSPR003673.6E-1198114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEFQTTLFSE NQSQDSSSTT SWSSQESFLW EDSFLHQSVS PSYYFDDFST FESSIVKEEE  60
EVTVAAKQKE EERSYRGVRK RPWGKYAAEI RDSTRKGIRV WLGTFDTAEE AALAYDQAAF  120
ALKGDLAVLN FPVEVVKETL WNMENVNFND GESPVIALKR KHSMRNRPRG KKKSSPSSSL  180
SSTSSSSYSS SSSSSSLSSR SRKQSVVTNQ ESDTSVVVLE DLGAEYLEEL MILCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2673135163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9216491e-148EU921649.1 Brassica oleracea var. gemmifera ethylene-responsive factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585036.11e-118PREDICTED: ethylene-responsive transcription factor ERF094
RefseqXP_013695799.11e-118PREDICTED: ethylene-responsive transcription factor ERF094-like
SwissprotQ9LND11e-84ERF94_ARATH; Ethylene-responsive transcription factor ERF094
TrEMBLA0A0D3C8101e-118A0A0D3C810_BRAOL; Uncharacterized protein
STRINGBra015478.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.16e-72octadecanoid-responsive Arabidopsis AP2/ERF 59